个人服务器计算环境搭建说明

IP 159.226.92.86 port 13101

ssh vscode

有限元软件包OpenPFEM：https://gitlab.com/xiegroup/OpenPFEM1.0

特征值软件包PASE：https://gitlab.com/xiegroup/pase1.0

特征值软件包GCGE：https://gitlab.com/xiegroup/gcge1.0

LSSC4

module

外部环境搭建

常用(根目录已有)

git

cmake、make、python、python3

gcc、mpich

高性能计算环境

blas、lapack （可以通过petsc来安装）

-lblas -llapack

petsc

https://www.mcs.anl.gov/petsc/mirror/release-snapshots/petsc-3.17.tar.gz

下载安装包、解压缩

x
wget https://www.mcs.anl.gov/petsc/mirror/release-snapshots/petsc-3.17.tar.gz
tar -xvf petsc-3.17.tar.gz 

安装脚本（指定了安装路径）

x
#!/bin/bash
./configure PETSC_ARCH=arch-nodebug \
   --prefix=/home/wangzijing/packages/petsc3_17_5 \
   --with-debugging=0 \
   COPTFLAGS='-O2 -march=native -mtune=native' \
   CXXOPTFLAGS='-O2 -march=native -mtune=native' \
   FOPTFLAGS='-O2 -march=native -mtune=native' \
   --download-fblaslapack \
   --download-scalapack \
   --with-cc=mpicc \
   --with-cxx=mpicxx \
   --with-fc=mpifort \
   --download-metis \
   --download-parmetis  \
   --download-suitesparse \
   --download-superlu_dist  \
   --download-mumps \
   --download-superlu \
   --download-hypre \
   --with-valgrind=0 --with-openmp

可能出现的错误

https://github.com/Reference-ScaLAPACK/scalapack/archive/5bad7487f496c811192334640ce4d3fc5f88144b.tar.gz

x
#!/bin/bash
./configure PETSC_ARCH=arch-nodebug \
   --prefix=/home/wangzijing/packages/petsc3_17_5 \
   --with-debugging=0 \
   COPTFLAGS='-O2 -march=native -mtune=native' \
   CXXOPTFLAGS='-O2 -march=native -mtune=native' \
   FOPTFLAGS='-O2 -march=native -mtune=native' \
   --download-fblaslapack \
   --download-scalapack=/home/wangzijing/packages/petsc-3.17.5/arch-nodebug/externalpackages/5bad7487f496c811192334640ce4d3fc5f88144b.tar.gz \
   --with-cc=mpicc \
   --with-cxx=mpicxx \
   --with-fc=mpifort \
   --download-metis \
   --download-parmetis  \
   --download-suitesparse \
   --download-superlu_dist  \
   --download-mumps \
   --download-superlu \
   --with-valgrind=0 --with-openmp

编译（按照提示命令即可）

x
make PETSC_DIR=/home/wangzijing/packages/petsc-3.17.5 PETSC_ARCH=arch-nodebug all

安装（按照提示命令即可）

xxxxxxxxxx
make PETSC_DIR=/home/wangzijing/packages/petsc-3.17.5 PETSC_ARCH=arch-nodebug install

添加路径到bashrc

xxxxxxxxxx
export PETSC_DIR=/home/wangzijing/packages/petsc3_17_5
export PETSC_ARCH=

x
source ~/.bashrc 
#注意vscode的“延时性”

slepc

https://slepc.upv.es/download/distrib/slepc-3.17.2.tar.gz

下载安装包、解压缩

x
wget https://slepc.upv.es/download/distrib/slepc-3.17.2.tar.gz
tar -xvf slepc-3.17.2.tar.gz

安装脚本

xxxxxxxxxx
#!/bin/sh
export PETSC_DIR=/home/wangzijing/packages/petsc3_17_5
export PETSC_ARCH=
./configure --prefix=/home/wangzijing/packages/slepc3_17_2

编译安装

make SLEPC_DIR=/home/wangzijing/packages/slepc-3.17.2 PETSC_DIR=/home/wangzijing/packages/petsc3_17_5
make SLEPC_DIR=/home/wangzijing/packages/slepc-3.17.2 PETSC_DIR=/home/wangzijing/packages/petsc3_17_5 install